Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_3086ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (370 aa)    
Predicted Functional Partners:
SPRI_3084
VWA domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.986
SPRI_3085
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.984
SPRI_3088
SWIM zinc finger domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.924
SPRI_3089
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.922
SPRI_1847
Von Willebrand factor type A; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.662
sucC-2
succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
     
 0.657
SPRI_3087
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.594
SPRI_3083
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.511
SPRI_2219
Protein T24A6.7; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.493
SPRI_3082
Putative Mucin-19; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.471
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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