Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3129Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (99 aa)    
Predicted Functional Partners:
SPRI_3130
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.875
SPRI_3132
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.862
SPRI_3133
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.853
SPRI_3128
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.
       0.831
SPRI_3131
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.779
SPRI_3134
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.750
SPRI_4568
Cell division protein FtsK; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.566
SPRI_2153
Cell division protein FtsK; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the FtsK/SpoIIIE/SftA family.
  
 
 0.525
SPRI_2168
Type VII secretion protein EccC; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.525
SPRI_6143
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.525
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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