SPRI_3159 protein (Streptomyces pristinaespiralis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPRI_3159

ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (540 aa)

Predicted Functional Partners:

rplM

0.908

rpsI

0.888

SPRI_3160

0.790

rplQ

0.698

rplD

0.691

rplC

0.689

rplU

0.684

rpsG

0.683

rpsO

0.682

rplI

0.679

Your Current Organism:

Streptomyces pristinaespiralis

NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRI_3159	SPRI_3160	SPRI_3159	SPRI_3160	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.790
SPRI_3159	rplC	SPRI_3159	SPRI_3191	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.689
SPRI_3159	rplD	SPRI_3159	SPRI_3190	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.691
SPRI_3159	rplI	SPRI_3159	SPRI_3813	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.679
SPRI_3159	rplM	SPRI_3159	SPRI_3158	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.908
SPRI_3159	rplQ	SPRI_3159	SPRI_3163	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L17; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.698
SPRI_3159	rplU	SPRI_3159	SPRI_4920	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.684
SPRI_3159	rpsG	SPRI_3159	SPRI_3198	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.683
SPRI_3159	rpsI	SPRI_3159	SPRI_3157	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.	0.888
SPRI_3159	rpsO	SPRI_3159	SPRI_2166	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.682
SPRI_3160	SPRI_3159	SPRI_3160	SPRI_3159	Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.790
SPRI_3160	rplM	SPRI_3160	SPRI_3158	Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.683
SPRI_3160	rpsI	SPRI_3160	SPRI_3157	Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.	0.665
rplC	SPRI_3159	SPRI_3191	SPRI_3159	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.689
rplC	rplD	SPRI_3191	SPRI_3190	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplI	SPRI_3191	SPRI_3813	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.991
rplC	rplM	SPRI_3191	SPRI_3158	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplQ	SPRI_3191	SPRI_3163	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L17; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.997
rplC	rplU	SPRI_3191	SPRI_4920	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplC	rpsG	SPRI_3191	SPRI_3198	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998