STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3335RTCB protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (397 aa)    
Predicted Functional Partners:
SPRI_3336
Secreted serine-rich protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.765
SPRI_3337
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.678
SPRI_3338
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.640
kptA
Phosphotransferase KptA/Tpt1; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
   
 0.491
SPRI_5762
Nucleotidyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.478
c104_20c
Peptide chain release factor 1; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.475
SPRI_7137
Peptide chain release factor 1; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.475
SPRI_6627
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.474
SPRI_6902
Peptide chain release factor 1; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.474
SPRI_5220
Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 0.411
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.