Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
SPRI_3335RTCB protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (397 aa)    
Predicted Functional Partners:
SPRI_3336
Secreted serine-rich protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.751
SPRI_5220
Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 0.720
SPRI_3337
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.659
SPRI_3338
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.619
c104_20c
Peptide chain release factor 1; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.611
SPRI_7137
Peptide chain release factor 1; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.611
SPRI_0118
ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 0.583
SPRI_1968
DEAD/DEAH box helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 0.583
SPRI_2710
ATP-dependent RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.
   
 0.583
SPRI_3953
RNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 0.583
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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