Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3378Xylose isomerase domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (267 aa)    
Predicted Functional Partners:
SPRI_3377
TetR family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.875
SPRI_3379
Exopolyphosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.820
ilvD
Dihydroxy-acid dehydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the IlvD/Edd family.
  
  
 0.778
SPRI_3380
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.741
SPRI_2392
TesB-like acyl-CoA thioesterase 3; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.727
SPRI_2380
vitamin-B12 independent methionine synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.581
SPRI_3929
Putative Lsr2-like protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.552
tatB
Preprotein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
  
     0.533
SPRI_5413
Cell division protein FtsL; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.486
SPRI_2197
Acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.476
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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