STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3392D-alanyl-D-alanine carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (532 aa)    
Predicted Functional Partners:
SPRI_3042
D-alanyl-D-alanine carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.931
SPRI_4325
D-alanyl-D-alanine carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.
     
 0.931
SPRI_6601
D-alanyl-D-alanine carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.
     
 0.931
SPRI_3430
D-alanyl-D-alanine carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 
0.927
SPRI_1303
Peptidase U61; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.751
SPRI_4912
Rod shape-determining protein RodA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
  
  
 0.585
SPRI_3429
Coenzyme F420 biosynthesis-associated protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.577
SPRI_0613
Peptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
 0.560
SPRI_2416
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.533
SPRI_2417
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.533
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.