Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_3392D-alanyl-D-alanine carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (532 aa)    
Predicted Functional Partners:
SPRI_3430
D-alanyl-D-alanine carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 
0.927
SPRI_3042
D-alanyl-D-alanine carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.918
SPRI_4325
D-alanyl-D-alanine carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.
     
 0.918
SPRI_6601
D-alanyl-D-alanine carboxypeptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.
     
 0.918
SPRI_1303
Peptidase U61; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.754
SPRI_4912
Rod shape-determining protein RodA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
  
  
 0.583
SPRI_0613
Peptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
 0.565
SPRI_2416
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.542
SPRI_2417
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.542
SPRI_2940
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.542
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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