Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_3413Amino acid ABC transporter amino acid-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (333 aa)    
Predicted Functional Partners:
SPRI_3416
ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.999
SPRI_3414
ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.998
SPRI_3415
ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.998
SPRI_5934
Glycine/betaine ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.781
SPRI_3412
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.772
SPRI_3056
Glycine betaine ABC transporter integral membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.717
SPRI_0363
Photosystem reaction center subunit H; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.669
SPRI_5048
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.669
SPRI_6181
Photosystem reaction center subunit H; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.669
SPRI_0497
PRC domain containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.563
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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