Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPRI_3466Oxygenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (351 aa)    
Predicted Functional Partners:
SPRI_3467
Aspartate kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.896
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
     0.889
SPRI_0186
PII peptide synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.806
SPRI_7167
PII peptide synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.806
SPRI_3472
Glutamate mutase S-chain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.800
SPRI_3471
Nikkomycin biosynthsis protein SanV; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.766
SPRI_3469
Multidrug DMT transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.740
SPRI_3312
DMT superfamily permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.658
SPRI_7008
Phosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.644
SPRI_3470
ABC transporter amino acid-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.530
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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