Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPRI_3494Membrane antiporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (446 aa)    
Predicted Functional Partners:
SPRI_3493
Aminoglycoside 3-N-acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.752
SPRI_3495
Periplasmic dipeptide-binding lipoprotein DppA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.665
SPRI_3496
Major facilitator transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.648
SPRI_6921
Dehydrogenase flavoprotein LodB; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.477
SPRI_2155
Two-component system sensor kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.473
SPRI_4207
Galactose oxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.455
SPRI_3497
Nikkomycin biosynthesis protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.453
SPRI_3498
Nikkomycin biosynthesis protein SanS; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.453
SPRI_3500
arpA protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.452
SPRI_3499
Alanine dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.449
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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