Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_3500arpA protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
SPRI_3497
Nikkomycin biosynthesis protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.746
SPRI_3498
Nikkomycin biosynthesis protein SanS; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.746
SPRI_3499
Alanine dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.746
SPRI_3501
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.541
SPRI_3502
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.541
SPRI_3495
Periplasmic dipeptide-binding lipoprotein DppA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.503
SPRI_3496
Major facilitator transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.503
SPRI_3494
Membrane antiporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.452
SPRI_3493
Aminoglycoside 3-N-acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.421
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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