STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3518Pilus assembly protein TadE; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (236 aa)    
Predicted Functional Partners:
SPRI_3517
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.843
SPRI_3519
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.786
SPRI_3521
Type II secretion system F domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.740
SPRI_3520
Type II secretion protein F; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.694
SPRI_3522
Pilus assembly protein CpaF; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.694
SPRI_3523
Septum site determining protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.694
SPRI_4462
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.690
SPRI_0469
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.644
SPRI_4525
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.640
SPRI_4524
Family 2 glycosyl transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.620
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.