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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3539NUDIX hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (288 aa)    
Predicted Functional Partners:
SPRI_3538
MBL fold metallo-hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     0.992
SPRI_3543
Ion-transporting ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.766
SPRI_3542
ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.756
SPRI_3540
LysR family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.749
SPRI_3541
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.737
SPRI_3537
SPFH/Band 7/PHB domain protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   0.694
SPRI_5395
Ferredoxin reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.529
SPRI_2706
TetR family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.436
SPRI_1039
Fatty acid-CoA racemase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.
  
    0.415
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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