Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_3558Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (252 aa)    
Predicted Functional Partners:
SPRI_5604
Cytochrome c oxidase subunit XV assembly protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.965
SPRI_1260
NADH dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
 0.836
SPRI_5350
Ubiquinol-cytochrome C reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 
 0.776
SPRI_0659
Cytochrome c oxidase subunit II; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.767
SPRI_5343
Cytochrome c oxidase subunit II; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.765
SPRI_3557
Peptide hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.764
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.739
SPRI_5348
Cytochrome B561; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.699
SPRI_3866
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 
 0.669
SPRI_5949
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   0.649
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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