STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3647Lysine biosynthesis protein LysW; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (62 aa)    
Predicted Functional Partners:
SPRI_3646
Ribosomal protein S6 modification protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the RimK family.
       0.884
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
       0.864
SPRI_3645
degT/DnrJ/EryC1/StrS aminotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.864
SPRI_3642
Acetyl-lysine deacetylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.846
SPRI_3640
Transketolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.839
SPRI_3641
Transketolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.839
SPRI_3644
Pyridoxal phosphate-dependent enzyme; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
       0.785
SPRI_3638
Hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.560
SPRI_3637
MFS transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.542
SPRI_3639
Cysteine synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.532
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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