STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3677Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (653 aa)    
Predicted Functional Partners:
SPRI_3675
Integral membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.673
SPRI_5614
Nitrogen fixation protein NifU; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.672
SPRI_3676
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.565
SPRI_5550
Hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.555
SPRI_1359
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.548
SPRI_2002
Membrane-bound polysaccharide biosynthesis protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.491
SPRI_4401
Pyrrolo-quinoline quinone; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.437
SPRI_4483
Racemase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.414
SPRI_0326
Fusaric acid resistamce protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.410
SPRI_0716
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.401
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.