Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
SPRI_3726rRNA methyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (219 aa)    
Predicted Functional Partners:
SPRI_3727
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.875
SPRI_3728
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.802
SPRI_3733
Phenylacetic acid degradation NADH oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.788
SPRI_3729
phenylacetate-CoA oxygenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.767
SPRI_3730
phenylacetate-CoA oxygenase subunit PaaB; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.767
SPRI_3731
Phenylacetic acid degradation protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.767
SPRI_3732
Phenylacetic acid degradation protein PaaD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.767
SPRI_3734
acyl-CoA dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
   0.688
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.681
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.681
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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