Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_3748Sortase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (234 aa)    
Predicted Functional Partners:
SPRI_3747
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.872
SPRI_3749
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.836
SPRI_3745
Peptidase C60; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    
0.823
SPRI_3744
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
0.814
SPRI_3746
Para-aminobenzoate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.797
crgA
Membrane protein; Involved in cell division; Belongs to the CrgA family.
       0.707
SPRI_0355
Peptidase C60; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.516
SPRI_4396
Transglycosylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.509
SPRI_6064
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.455
SPRI_6063
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.426
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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