Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3769Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (321 aa)    
Predicted Functional Partners:
SPRI_3770
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.970
SPRI_3761
5,10-methylene tetrahydromethanopterin reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.800
SPRI_3760
Flavoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.710
SPRI_3762
ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.621
SPRI_1242
Sugar phosphate isomerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.606
SPRI_3771
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.594
SPRI_3759
Flavoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.583
SPRI_3768
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.525
SPRI_3758
Peptidase M16 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.517
SPRI_1241
TatD family hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.485
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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