Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_3775Putative membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (44 aa)    
Predicted Functional Partners:
SPRI_5247
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.732
SPRI_2653
Metal-dependent phosphohydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.725
SPRI_3774
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.694
SPRI_2524
ATP synthase I; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.652
SPRI_4462
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.639
SPRI_4353
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.622
SPRI_5239
DNA primase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.591
SPRI_5947
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.563
SPRI_4910
Rod shape-determining protein MreD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.537
SPRI_3365
Phosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.532
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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