STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3847ABC transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (1201 aa)    
Predicted Functional Partners:
SPRI_3845
Cytochrome BD ubiquinol oxidase subunit I; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.998
SPRI_3846
Cytochrome C oxidase assembly protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.998
SPRI_1600
ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
0.985
SPRI_0744
Cytochrome BD oxidase subunit II; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.958
SPRI_1599
ABC transporter ATPase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 
0.915
SPRI_3848
Two component sensor; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.893
SPRI_3849
Peptidase M23; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.711
pat
Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
       0.704
SPRI_5056
Two-component system sensor kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.616
SPRI_3986
Peptidase P60; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
  
 0.431
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.