Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_3864Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (640 aa)    
Predicted Functional Partners:
SPRI_3867
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.996
SPRI_3865
Copper chaperone; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.980
SPRI_3863
Peroxidase; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
  
 0.968
SPRI_3866
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.879
SPRI_3862
Prephenate dehydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.860
SPRI_5289
Peptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.842
SPRI_4206
Peroxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.831
SPRI_5395
Ferredoxin reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
   0.775
SPRI_3868
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.719
SPRI_3360
Alpha-ketoglutarate decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.681
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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