Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_3866Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (232 aa)    
Predicted Functional Partners:
SPRI_3865
Copper chaperone; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.971
SPRI_5343
Cytochrome c oxidase subunit II; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.895
SPRI_0659
Cytochrome c oxidase subunit II; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.894
SPRI_3864
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.879
SPRI_5604
Cytochrome c oxidase subunit XV assembly protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.878
SPRI_3867
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.825
SPRI_3863
Peroxidase; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
       0.798
SPRI_3862
Prephenate dehydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.770
SPRI_3318
Redoxin domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.742
SPRI_3868
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.732
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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