Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPRI_4028Folate-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the GcvT family. (323 aa)    
Predicted Functional Partners:
SPRI_5338
Iron-sulfur cluster assembly accessory protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the HesB/IscA family.
 
 
 0.895
SPRI_4027
Fur family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the Fur family.
       0.869
SPRI_4026
Fatty acid-binding protein; May play a role in the intracellular transport of hydrophobic ligands.
 
    0.841
SPRI_5068
DUF3145 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.699
SPRI_1787
Uncharacterized protein Q1 colocalized with Q; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.655
SPRI_4023
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.655
SPRI_4024
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.655
SPRI_6011
Uroporphyrinogen III methylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.
  
  
 0.636
SPRI_4021
Sulfur reduction protein DsrE; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.626
SPRI_3507
DNA polymerase III subunit delta; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.580
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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