STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_4032UPF0256 protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (414 aa)    
Predicted Functional Partners:
SPRI_4030
AmfC protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.666
SPRI_4031
Asparaginase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.654
SPRI_4954
DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.524
SPRI_5640
Regulation of enolase 1; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.493
whiB-3
DNA-binding protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
   
  
 0.460
dtd
D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
       0.446
SPRI_1110
MFS transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.422
SPRI_1881
MFS transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.422
SPRI_2366
Major facilitator superfamily transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.422
SPRI_2480
MFS transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.422
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.