Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPRI_4338Integrase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (82 aa)    
Predicted Functional Partners:
SPRI_4337
Integrase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.896
SPRI_4546
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.581
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.575
whiA
Sporulation protein; Involved in cell division and chromosome segregation.
  
    0.569
SPRI_2658
PF02586 family protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.
   
    0.511
SPRI_2808
Integrase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
  
     0.488
SPRI_2155
Two-component system sensor kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.400
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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