STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_4476Polyketide cyclase/dehydrase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (154 aa)    
Predicted Functional Partners:
SPRI_4477
Diaminopimelate decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.814
SPRI_4475
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.625
SPRI_4479
Allantoate amidohydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.607
SPRI_4480
N-formimino-L-glutamate deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.607
SPRI_4474
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.592
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.574
hutI
Imidazolonepropionase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.521
SPRI_4473
Diacylglyceryl transferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.481
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.