Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_4483Racemase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
SPRI_3829
Hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
 0.905
SPRI_5717
Phosphoserine phosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
 0.905
SPRI_1011
Amino acid oxidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 
  0.904
SPRI_3209
Aspartate aminotransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
 0.904
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.903
SPRI_2926
Threonine dehydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
  0.903
SPRI_3595
Bifunctional beta-cystathionase/maltose regulon regulatory protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
  0.903
SPRI_4477
Diaminopimelate decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
  0.903
SPRI_3832
Cystathionine gamma-lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.902
SPRI_4467
Cystathionine beta-synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
  0.902
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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