Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_4567Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (455 aa)    
Predicted Functional Partners:
SPRI_4565
Sugar ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.996
SPRI_4566
ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  0.993
SPRI_4233
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
  0.974
SPRI_1755
ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  0.971
SPRI_1754
Sugar ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.966
SPRI_4081
Sugar ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
 0.909
SPRI_5834
Sugar ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
 0.909
SPRI_1756
ABC transporter solute-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 
0.904
SPRI_4568
Cell division protein FtsK; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.584
SPRI_6415
ABC transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.492
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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