Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPRI_4602Oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (771 aa)    
Predicted Functional Partners:
SPRI_1596
Oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.994
SPRI_4601
(2Fe-2S)-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.991
SPRI_6662
(2Fe-2S)-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.990
SPRI_4600
Dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.952
SPRI_1597
Carbon monoxide dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.951
SPRI_6661
Molybdopterin dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.893
SPRI_2023
Dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     0.834
SPRI_1593
Xanthine dehydrogenase accessory factor; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.832
SPRI_1441
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.793
SPRI_1550
Hydroxydechloroatrazine ethylaminohydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.658
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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