STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_4643PTS sugar transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (77 aa)    
Predicted Functional Partners:
SPRI_6170
PTS glucose transporter subunit IIA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
 0.966
SPRI_6864
PTS lactose transporter subunit IIC; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.941
SPRI_4642
PTS sugar transporter subunit IIA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.912
SPRI_4641
PTS lactose transporter subunit IIC; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.882
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
       0.786
SPRI_0736
Beta-hexosaminidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.719
SPRI_1498
Hyaluronidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.719
SPRI_3026
beta-N-acetylglucosaminidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.719
SPRI_4599
beta-N-acetylhexosaminidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.719
SPRI_4756
beta-N-acetylhexosaminidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.719
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.