Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
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[Homology]
Score
SPRI_4673DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (715 aa)    
Predicted Functional Partners:
SPRI_4674
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.875
SPRI_4675
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.875
SPRI_4672
Helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.758
SPRI_5195
Mucin; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.741
SPRI_4671
DNA helicase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.739
SPRI_4676
DNA methylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.726
SPRI_4667
Acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.653
SPRI_5128
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.642
SPRI_4156
Zn-dependent protease with chaperone function; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.630
SPRI_4669
DUF1998 domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.609
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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