Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_4693Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (297 aa)    
Predicted Functional Partners:
SPRI_4692
ROK family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.747
SPRI_4694
Haloacid dehalogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the HAD-like hydrolase superfamily.
       0.723
SPRI_4690
UPF0303 protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the UPF0303 family.
       0.686
SPRI_4691
Oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.686
SPRI_4695
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.672
SPRI_4696
Sortase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.672
SPRI_3117
RNA polymerase sigma factor SigD; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
   
    0.613
SPRI_1398
Peptidoglycan-binding domain 1 containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.551
SPRI_6709
N-acetylmuramoyl-L-alanine amidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.551
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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