Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
SPRI_4696Sortase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (231 aa)    
Predicted Functional Partners:
SPRI_4695
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.875
SPRI_4694
Haloacid dehalogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the HAD-like hydrolase superfamily.
       0.774
SPRI_4697
Endoglucanase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase family 6.
       0.729
SPRI_4693
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.672
SPRI_4691
Oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.588
SPRI_6424
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.486
SPRI_4690
UPF0303 protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the UPF0303 family.
       0.429
SPRI_5663
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.416
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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