Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_4702Chitin-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (195 aa)    
Predicted Functional Partners:
SPRI_2514
Chitinase C; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
 0.752
SPRI_2211
Chitinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.740
SPRI_4700
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.693
SPRI_2782
Chitinase II; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
  
 0.691
SPRI_2863
Chitinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.661
SPRI_6115
Chitinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.619
SPRI_4701
Membrane protease subunit; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.609
SPRI_1710
Chitinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.592
SPRI_4722
Glycoside hydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
   
 0.527
SPRI_3346
Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.511
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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