Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_4732Tetratricopeptide repeat protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (472 aa)    
Predicted Functional Partners:
SPRI_6153
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.737
SPRI_4733
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.731
SPRI_6653
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.729
SPRI_4402
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.722
SPRI_2885
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family.
  
     0.714
SPRI_3079
XRE family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.694
SPRI_4401
Pyrrolo-quinoline quinone; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.687
SPRI_1860
Biotin transporter BioY; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.676
SPRI_0582
PE-PGRS family protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.655
SPRI_4323
XRE family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.655
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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