Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPRI_4796Xylose isomerase domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (261 aa)    
Predicted Functional Partners:
SPRI_4797
MarR family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.875
SPRI_4801
Oxidoreductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.745
SPRI_4803
Xylose isomerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.693
SPRI_4798
Ion channel protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.668
SPRI_4802
PF06187 family protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
    0.655
SPRI_6789
Restriction endonuclease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.559
SPRI_4800
LacI family transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.543
SPRI_4791
beta-N-acetylhexosaminidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.
       0.501
SPRI_4795
GCN5-related N-acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.498
SPRI_4337
Integrase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.423
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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