Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPRI_4841Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
SPRI_4840
Thioesterase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.886
SPRI_4839
ABC transporter ATP-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.875
SPRI_4838
Peptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.794
SPRI_3981
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.672
SPRI_2270
Negative regulator NsdA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.657
SPRI_5879
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.649
SPRI_3736
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.647
SPRI_3980
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.635
SPRI_4837
Single-stranded DNA-binding domain-containing protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.633
SPRI_6969
Regulatory protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.607
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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