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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_4887Putative UPF0256 protein 2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (409 aa)    
Predicted Functional Partners:
SPRI_4888
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.783
SPRI_4890
Phosphohydrolase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.555
SPRI_4954
DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.524
SPRI_5640
Regulation of enolase 1; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.500
whiB-3
DNA-binding protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
   
  
 0.460
SPRI_6424
Lipoprotein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.445
SPRI_1110
MFS transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.422
SPRI_1881
MFS transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.422
SPRI_2366
Major facilitator superfamily transporter permease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.422
SPRI_2480
MFS transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
   
    0.422
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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