Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_4954DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (318 aa)    
Predicted Functional Partners:
SPRI_4955
Integral membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.970
SPRI_2847
Peptidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the peptidase A24 family.
   
  
 0.781
SPRI_2326
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.713
SPRI_4032
UPF0256 protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.608
SPRI_4887
Putative UPF0256 protein 2; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.608
SPRI_6799
Acetyltransferase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.608
SPRI_4953
Fatty acid-binding protein DegV; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.588
SPRI_4475
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.534
SPRI_4515
Transcriptional regulator; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.533
leuS
leucyl-tRNA synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.530
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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