Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_4981Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (434 aa)    
Predicted Functional Partners:
ybeY
16S rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.915
SPRI_4979
Phosphate starvation protein PhoH; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.893
SPRI_4982
DNA-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.875
SPRI_4978
Carbohydrate kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.706
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.596
SPRI_5742
Cytochrome C oxidase subunit II; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.583
SPRI_4985
Cytidine deaminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.582
SPRI_3786
UPF0161 hemolytic domain containing protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
     
 0.580
SPRI_1089
6-phospho-beta-glucosidase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
SPRI_4915
Glucarate dehydratase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.530
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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