Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPRI_5001Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (187 aa)    
Predicted Functional Partners:
SPRI_0002
Putative transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.735
SPRI_7351
Putative transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.735
SPRI_2129
Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   
 0.704
SPRI_0981
1-hydroxy-2-methyl-2-butenyl 4-diphosphate reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.508
SPRI_3818
Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.503
SPRI_1455
Transposase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.465
SPRI_0984
Squalene/phytoene dehydrogenase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.438
SPRI_1975
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.424
SPRI_3881
DNA primase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.423
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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