Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SPRI_5019Translocation protein TolB; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (385 aa)    
Predicted Functional Partners:
SPRI_5552
Arginine and alanine rich protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.525
SPRI_5020
Glyoxalase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
       0.522
SPRI_6941
Nuclease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.479
SPRI_0520
Alkaline phosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.460
SPRI_2610
Phosphodiesterase/alkaline phosphatase D; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.457
SPRI_5021
Nitrite reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.429
SPRI_5234
Alkaline phosphatase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.426
SPRI_2505
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.424
SPRI_5022
Nitrite reductase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
     0.424
SPRI_6619
Transmembrane protease serine 13; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.402
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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