Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_5051Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (650 aa)    
Predicted Functional Partners:
SPRI_1443
Virulence factor; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
     0.619
SPRI_4683
Preprotein translocase SecA; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.552
SPRI_4401
Pyrrolo-quinoline quinone; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.543
SPRI_0716
Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
  
 0.528
SPRI_2002
Membrane-bound polysaccharide biosynthesis protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
   
 0.519
SPRI_4402
Secreted protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
    0.506
SPRI_4243
Calcium-binding protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.504
SPRI_2729
Membrane protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
   0.492
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.463
SPRI_4341
M6 family metalloprotease; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
     0.462
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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