STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHO29622.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)    
Predicted Functional Partners:
helZ
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.962
KHO29623.1
DNA repair exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.758
KHO29624.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.758
KHO29625.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.720
putP
Proline:sodium symporter PutP; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.641
KHO29626.1
Protein GrpE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.553
rapA
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.500
KHO29619.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.494
KHO28580.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
Your Current Organism:
Corynebacterium minutissimum
NCBI taxonomy Id: 38301
Other names: ATCC 23348, C. minutissimum, CCUG 541, CIP 100652, DSM 20651, IFO 15361, JCM 9387, NBRC 15361, NCTC 10288
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