STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHO28963.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (853 aa)    
Predicted Functional Partners:
KHO28962.1
Proteasome protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
KHO30473.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
KHO28964.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.548
KHO30472.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.517
hrpA
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.507
odhI
Oxoglutarate dehydrogenase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
KHO28965.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.423
Your Current Organism:
Corynebacterium minutissimum
NCBI taxonomy Id: 38301
Other names: ATCC 23348, C. minutissimum, CCUG 541, CIP 100652, DSM 20651, IFO 15361, JCM 9387, NBRC 15361, NCTC 10288
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