STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywaCGTP pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.875
KHO30193.1
NTP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.834
glgX_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.728
polC
DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.668
rel
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
 0.609
glgX_2
Malto-oligosyltrehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
       0.564
tetR
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
KHO29009.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
ppx2
Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.499
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
     
  0.499
Your Current Organism:
Corynebacterium minutissimum
NCBI taxonomy Id: 38301
Other names: ATCC 23348, C. minutissimum, CCUG 541, CIP 100652, DSM 20651, IFO 15361, JCM 9387, NBRC 15361, NCTC 10288
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