Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL76837.1 | SDL78612.1 | SAMN04488535_0720 | SAMN04488535_0775 | Protein of unknown function. | Helix-turn-helix domain-containing protein. | 0.668 |
SDL76837.1 | SDM08281.1 | SAMN04488535_0720 | SAMN04488535_1841 | Protein of unknown function. | Broad specificity phosphatase PhoE. | 0.743 |
SDL76837.1 | SDM14837.1 | SAMN04488535_0720 | SAMN04488535_2107 | Protein of unknown function. | Putative hydrolase. | 0.738 |
SDL76837.1 | rbpA | SAMN04488535_0720 | SAMN04488535_0517 | Protein of unknown function. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.773 |
SDL78583.1 | SDL78612.1 | SAMN04488535_0774 | SAMN04488535_0775 | Phage shock protein A. | Helix-turn-helix domain-containing protein. | 0.848 |
SDL78583.1 | SDL78639.1 | SAMN04488535_0774 | SAMN04488535_0776 | Phage shock protein A. | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | 0.708 |
SDL78583.1 | SDL78672.1 | SAMN04488535_0774 | SAMN04488535_0777 | Phage shock protein A. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.708 |
SDL78583.1 | SDL78703.1 | SAMN04488535_0774 | SAMN04488535_0778 | Phage shock protein A. | Tellurite resistance protein TerC. | 0.705 |
SDL78612.1 | SDL76837.1 | SAMN04488535_0775 | SAMN04488535_0720 | Helix-turn-helix domain-containing protein. | Protein of unknown function. | 0.668 |
SDL78612.1 | SDL78583.1 | SAMN04488535_0775 | SAMN04488535_0774 | Helix-turn-helix domain-containing protein. | Phage shock protein A. | 0.848 |
SDL78612.1 | SDL78639.1 | SAMN04488535_0775 | SAMN04488535_0776 | Helix-turn-helix domain-containing protein. | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | 0.880 |
SDL78612.1 | SDL78672.1 | SAMN04488535_0775 | SAMN04488535_0777 | Helix-turn-helix domain-containing protein. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.828 |
SDL78612.1 | SDL78703.1 | SAMN04488535_0775 | SAMN04488535_0778 | Helix-turn-helix domain-containing protein. | Tellurite resistance protein TerC. | 0.848 |
SDL78612.1 | SDL93033.1 | SAMN04488535_0775 | SAMN04488535_1289 | Helix-turn-helix domain-containing protein. | ATP-dependent Clp protease ATP-binding subunit ClpC; Belongs to the ClpA/ClpB family. | 0.609 |
SDL78612.1 | SDM08281.1 | SAMN04488535_0775 | SAMN04488535_1841 | Helix-turn-helix domain-containing protein. | Broad specificity phosphatase PhoE. | 0.664 |
SDL78612.1 | SDM14837.1 | SAMN04488535_0775 | SAMN04488535_2107 | Helix-turn-helix domain-containing protein. | Putative hydrolase. | 0.668 |
SDL78612.1 | clpP-2 | SAMN04488535_0775 | SAMN04488535_1134 | Helix-turn-helix domain-containing protein. | ATP-dependent Clp protease proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.612 |
SDL78612.1 | rbpA | SAMN04488535_0775 | SAMN04488535_0517 | Helix-turn-helix domain-containing protein. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.615 |
SDL78639.1 | SDL78583.1 | SAMN04488535_0776 | SAMN04488535_0774 | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | Phage shock protein A. | 0.708 |
SDL78639.1 | SDL78612.1 | SAMN04488535_0776 | SAMN04488535_0775 | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | Helix-turn-helix domain-containing protein. | 0.880 |
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