STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL87372.1Long-chain acyl-CoA synthetase. (612 aa)    
Predicted Functional Partners:
SDM13427.1
Fatty acid synthase, bacterial type.
  
 0.974
SDL96746.1
Lipase (class 2).
     
 0.881
SDL97421.1
Mycolic acid condensase.
  
 0.861
SDL71173.1
Dolichol-phosphate mannosyltransferase.
  
   
 0.825
SDL95844.1
Alpha/beta hydrolase family protein.
     
 0.820
rplE
LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.810
SDL89526.1
ATP-binding cassette protein, ChvD family.
   
  
 0.789
SDM06766.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
  0.732
SDL76064.1
acyl-CoA thioesterase-2.
   
 
 0.709
SDM01149.1
Hypothetical protein.
    
 0.681
Your Current Organism:
Corynebacterium mycetoides
NCBI taxonomy Id: 38302
Other names: ATCC 43995, C. mycetoides, CCUG 27538, CIP 55.51, DSM 20632, IFO 15289, JCM 9388, NBRC 15289, NCTC 9864
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.