Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL82177.1 | SDL84725.1 | SAMN04488535_0891 | SAMN04488535_0980 | DNA polymerase-3 subunit alpha. | Probable phosphoglycerate mutase. | 0.410 |
SDL82177.1 | SDL89558.1 | SAMN04488535_0891 | SAMN04488535_1159 | DNA polymerase-3 subunit alpha. | Single-strand DNA-binding protein. | 0.869 |
SDL82177.1 | SDM00530.1 | SAMN04488535_0891 | SAMN04488535_1538 | DNA polymerase-3 subunit alpha. | Single-strand binding protein. | 0.886 |
SDL82177.1 | dnaE2 | SAMN04488535_0891 | SAMN04488535_2000 | DNA polymerase-3 subunit alpha. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.619 |
SDL82177.1 | dnaX | SAMN04488535_0891 | SAMN04488535_1728 | DNA polymerase-3 subunit alpha. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.990 |
SDL84725.1 | SDL82177.1 | SAMN04488535_0980 | SAMN04488535_0891 | Probable phosphoglycerate mutase. | DNA polymerase-3 subunit alpha. | 0.410 |
SDL84725.1 | SDL89558.1 | SAMN04488535_0980 | SAMN04488535_1159 | Probable phosphoglycerate mutase. | Single-strand DNA-binding protein. | 0.861 |
SDL84725.1 | SDM00530.1 | SAMN04488535_0980 | SAMN04488535_1538 | Probable phosphoglycerate mutase. | Single-strand binding protein. | 0.877 |
SDL84725.1 | dnaE2 | SAMN04488535_0980 | SAMN04488535_2000 | Probable phosphoglycerate mutase. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.410 |
SDL84725.1 | dnaX | SAMN04488535_0980 | SAMN04488535_1728 | Probable phosphoglycerate mutase. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.536 |
SDL89467.1 | SDL89499.1 | SAMN04488535_1156 | SAMN04488535_1157 | Hypothetical protein. | acyl-CoA thioester hydrolase. | 0.833 |
SDL89467.1 | SDL89526.1 | SAMN04488535_1156 | SAMN04488535_1158 | Hypothetical protein. | ATP-binding cassette protein, ChvD family. | 0.741 |
SDL89467.1 | SDL89558.1 | SAMN04488535_1156 | SAMN04488535_1159 | Hypothetical protein. | Single-strand DNA-binding protein. | 0.625 |
SDL89499.1 | SDL89467.1 | SAMN04488535_1157 | SAMN04488535_1156 | acyl-CoA thioester hydrolase. | Hypothetical protein. | 0.833 |
SDL89499.1 | SDL89526.1 | SAMN04488535_1157 | SAMN04488535_1158 | acyl-CoA thioester hydrolase. | ATP-binding cassette protein, ChvD family. | 0.741 |
SDL89499.1 | SDL89558.1 | SAMN04488535_1157 | SAMN04488535_1159 | acyl-CoA thioester hydrolase. | Single-strand DNA-binding protein. | 0.625 |
SDL89526.1 | SDL89467.1 | SAMN04488535_1158 | SAMN04488535_1156 | ATP-binding cassette protein, ChvD family. | Hypothetical protein. | 0.741 |
SDL89526.1 | SDL89499.1 | SAMN04488535_1158 | SAMN04488535_1157 | ATP-binding cassette protein, ChvD family. | acyl-CoA thioester hydrolase. | 0.741 |
SDL89526.1 | SDL89558.1 | SAMN04488535_1158 | SAMN04488535_1159 | ATP-binding cassette protein, ChvD family. | Single-strand DNA-binding protein. | 0.687 |
SDL89526.1 | rpsF | SAMN04488535_1158 | SAMN04488535_1539 | ATP-binding cassette protein, ChvD family. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.882 |
page 1 of 3