STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL89826.1Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. (211 aa)    
Predicted Functional Partners:
SDL89802.1
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.831
SDL89767.1
Hypothetical protein.
       0.816
SDL89733.1
Hypothetical protein.
       0.790
SDL89669.1
Hypothetical protein.
       0.757
SDL89696.1
Hypothetical protein.
       0.757
SDM02195.1
poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
     
 0.637
SDL79200.1
Phosphoesterase RecJ domain-containing protein.
      
 0.636
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
   
  
 0.618
SDL89632.1
2,4-dienoyl-CoA reductase.
       0.612
SDL59393.1
3'(2'),5'-bisphosphate nucleotidase.
      
 0.608
Your Current Organism:
Corynebacterium mycetoides
NCBI taxonomy Id: 38302
Other names: ATCC 43995, C. mycetoides, CCUG 27538, CIP 55.51, DSM 20632, IFO 15289, JCM 9388, NBRC 15289, NCTC 9864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.